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When Ahsoka left, her dragon would take no other rider. The Jedi accepted this, as was their nature, and let her be to do as she wished, separate from the other dragons. Good; this left her and Anakin the chance to be alone together. He snuck her treats, first in hopes of Ahsoka returning and then because that hope was gone, and it wasn’t weakness to make sure the dragons were thriving.
After Ahsoka called him, her dragon nuzzled his cheek with her snout and he rested his face against her scales, before pulling her head in for a hug.