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Summary
Kaidan Alenko was a powerful biotic. After he helped Commander Shepard defeat Saren and Sovereign the galaxy saw just what human biotics could be capable of. Unfortunately his skill drew the eye of the terrorist group known as Cerberus. Months after the Normandy went down, newly promoted Commander Alenko went missing on an assignment. For two years he was MIA until there was a distress signal out in the Nubian Expanse. By the time the Alliance got there, there was nothing left but a ship full of dead mercs and Cerberus agents alike, but no sign of the biotic.
Alternate Universe. Character swap. Kaidan Alenko is Subject Zero. Retelling of ME2.
(this is a terrible summary, so expect a better one)