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Subject 01554, or the Destroyer of Worlds by tideisrising
Fandoms: Agents of S.H.I.E.L.D. (TV)
08 Oct 2025
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AU in which Daisy is found and captured by Hydra at the age of fourteen. Shortly after the beginning of Season 2, SHIELD raids a Hydra facility and finds a young woman with mysterious powers languishing in a cell.
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One By One by alienkrypton
Fandoms: Agents of S.H.I.E.L.D. (TV), Marvel Cinematic Universe, Marvel
24 Aug 2025
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Skye's life is a series of fated encounters, meeting each of her soulmates one by one across years. She never expected that all her soulmates that she met are part of the Avengers.
(a Skye x Avengers soulmate fic)
Update: This story somehow ended up being Hydra!Skye focused, but the main story is still Skye x Avengers soulmate fic
Series
- Part 9 of Soulmates in Different Universes
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Daisy was sent by an organization to participate in Project Centipede.
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“What would you make of being a handler?” Bakshi interrupted her musings. This time Bobbi couldn't completely mask the surprise on her face as her brows twitched.
”A handler sir?” she asked with both genuine curiosity and weariness. Bakshi hummed as he opened a drawer and pulled out black file, dropping it with a resounding thud on his desk.
Even from her vantage point she could read the red ink reading ‘Destroyer of worlds’. She fought hard for control over her body, sitting perfectly still and not showing the whirl of anxiety and adrenaline at the name. This was what they had been looking for.
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A s2 AU where Bobbi is undercover to discover what the Destroyer of Worlds project is all about.Series
- Part 8 of Whumptober 2024!
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Hidden Figures by ReadsForLife
Fandoms: The Avengers (Marvel Movies), Marvel Cinematic Universe, Agents of S.H.I.E.L.D. (TV), Marvel (Comics), Marvel, Spider-Man (Tom Holland Movies)
07 Aug 2024
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After being raised in Hydra, Daisy Johnson becomes a mercenary. When SHIELD hears about the girl that saved one of their agents, they plan to track her down. The Avengers also have this powered person on their radar. Will Daisy get dragged into the war between Hydra and SHIELD or will she find the home she never had? (Takes place before AoU and during Season 3 of Agents of Shield, but is not canon)
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Found at a young by her parents Skye learns of her heritage and embraces her birthright.
The world will not be prepared for the future threats that will be unleashed in the future.
Series
- Part 1 of One-shots to revisit
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After spending about 2 years undercover within SHIELD for Whitehall, Daisy Johnson, a 23-year-old hacker and agent, finally revealed herself to her team. It was hard for the team forgive her after what she did, especially after finding out she'd been lying about her entire life. It was harder for Jemma, having fallen in love with the former Hydra agent. The San Juan mission had changed everything for SHIELD as a whole, but also for each one of its member individually.
Now, Daisy has to figure out how she belongs in SHIELD now that she is both Inhuman and a former Hydra operative.
Whole series is getting a rewrite, sorry about thatSeries
- Part 2 of A New Path To Follow (old version)
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When Bobbi went undercover in Hydra, as the second in command of security, in one of Daniel Whitehall’s bases, she had two jobs one to gather information on Hydra and second to keep an eye on Jemma Simmons, who was also undercover. She did not expect to find her Soulmate.
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The next step in Skye's training with her S.O. was how to fight brainwashing. She wasn't looking forward to it at all, but it beat some of the other types of training she could be doing at the moment. And she had no reason to assume Ward had any ulterior motives beyond training. That ignorance would cost her.
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Альтернативна “перша” версія Фреймворку, в який Джемма Сіммонс була жива і разом з Фіцем перейшла на сторону Гідри.
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Chaos and Destruction by orphan_account
Fandoms: Agents of S.H.I.E.L.D. (TV), The Avengers (Marvel) - All Media Types, Marvel Cinematic Universe, Marvel
06 Aug 2023
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Daisy Johnson. Once head of Hydra turned Avenger and Shield had through she had seen everything. After being trained for all her life though her self as unbreakable. Yet it all came down to a decision to free the twins and help the Avengers with ultron.
Who knew the consequences would be almost life changing. Finding Love within everything and a foretold Myth and a legend as old as time cost more then it should have. It was more then her wildest imagination that she was part of something way deeper the earth.
Daisy Johnson X Wanda Maximoff
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lay your weapons down (they're calling off the war) by rubys_ramblings
Fandoms: Agents of S.H.I.E.L.D. (TV), The Avengers (Marvel Movies), Captain America (Movies)
17 Jun 2023
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Whitehall pulls his forces out of the temple, taking Skye with him.
they finally get her back nearly three months later- ready to comply.
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Grant Ward and Leo Fitz are sent on their mission to disable the Overkill device. Skye finally has a chance to dig into SHIELD's main archives when Garrett's team comes to the Hub. The two teams finally cross paths.
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- Part 5 of The Girl from the Coffee Shop
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Unknown Soldier by KaraSmoak
Fandoms: Agents of S.H.I.E.L.D. (TV), Marvel Cinematic Universe, The Avengers (Marvel Movies)
21 Aug 2022
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There’s a secret within the Winter Soldier Program. A secret weapon known only by those on the ‘need to know’ list. A Hydra WMD capable of breaking the Richter Scale parameters. That weapon, you may ask? A 16-year-old girl.
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i can’t save us (my atlantis, we fall) by cassiopluto
Fandoms: Agents of S.H.I.E.L.D. (TV)
15 Jun 2022
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“One of my contacts from pre-SHIELD sent me some chatter on the web. HYDRA loyalists are proclaiming the weapon, spouting a lot of bullshit that might actually hold some weight.”
She didn’t tell him that the weapon she wanted them to go pick up was her sister.
She’s pretty sure it would give him an aneurysm. So she’ll just tell them later, preferably when they had rescued her twin from the HYDRA Nazi’s who had held her captive for the last four years and used her as a weapon.
If she was still alive, that was.
— SHIELD AU where Kora was the one they picked up in S1, and now she wants them to save her sister, who just happens to be HYDRA’s greatest weapon.
Series
- Part 1 of i was a kid but i wasn’t clueless
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A Post Hydra World by Rhino (RhinoMouse)
Fandoms: Agents of S.H.I.E.L.D. (TV), Marvel Cinematic Universe
18 Apr 2022
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So the worst spy mission ever ended in possibly the single most successful SHIELD mission of all time..... No one was prepared for that, and now Director Coulson has a former Head of Hydra to handle...somehow. He's living his worst life, the stress is going to finish off the last of his remaining hair. Meanwhile Jemma is finding SHIELD isn't quite the same, or maybe she just doesn't quite fit the same way after everything. But her girlfriend at least realizes they're an actual couple now, so some things are looking up! Which Daisy thinks the question of 'what do you want to do now?' should be outlawed. Is she allowed to punch the next therapist who asks her? The Avengers would like to know what the ever living hell is going on!
Or Part Two of the Whitehall captured Daisy as a teenager fic.
Series
- Part 2 of The Hydra Disaster
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Family Ties: A Clash Between Two Worlds by KaraSmoak
Fandoms: Agents of S.H.I.E.L.D. (TV)
14 Feb 2022
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Skylar "Skye" Johnson and Daisy Johnson are twins, but they were both taken by Hydra at age 12, experimented on. They also both went through terrigenesis. Skye wasn’t as good as Daisy at picking up things like fighting and control over her newfound abilities, which they were both identical as well. When they lost interest in Skye, they erased her memory of her sister as well as what Hydra did to her, and they completely erased Daisy's memory of her previous life.
What will happen when they meet again, 7 years later?
Currently in the works of being rewritten -
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Daisy Johnson, a 22-year-old hacker, isn't who she says she is. The truth is that she is a Hydra agent. She lied to the team ever since they picked her up in LA about 2 years ago. The only truth to the character she portrays is the love she has for one Jemma Simmons. How will everyone react to the reveal? Will they give her a second chance if she asks? But redemption is a hard thing to come by... especially when you hurt those who've believed in you even when you didn't.
Rewriting this hot mess rn, will leave this one up forever probably
Series
- Part 1 of A New Path To Follow (old version)
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A Different Origin by iskiforfun
Fandoms: Agents of S.H.I.E.L.D. (TV), Marvel Cinematic Universe
10 Jan 2021
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Already aware of her mysterious past, Dr. Whitehall finds Skye before S.H.I.E.L.D. does, but Skye ends up on The Bus anyway. Except, Skye is secretly Daisy, a brainwashed informant working for Whitehall. Everything changes once Hydra steps back into the light, and Agent Grant Ward is in for a big surprise. Unaware of Dr. Whitehall's plans, Agent John Garrett agrees to keep his eye out for a certain device of unknown origin within S.H.I.E.L.D.
Will the end of Season 1 still occur as we know it?
Status: on hiatus but not abandoned